Publications

• ScSNViz: a user-friendly toolset for visualization and analysis of Cell-Specific Expressed SNVs.
  Kim A, Martinez S, Edwards N, Horvath A.
• SCExecute: custom cell barcode-stratified analyses of scRNA-seq data.
  Edwards N, Dillard C, Prashant NM, Hongyu L, Yang M, Ulianova E, Horvath A.
• SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data.
  Prashant NM, Alomran N, Chen Y, Liu H, Bousounis P, Movassagh M, Edwards N, Horvath A.
• scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets.
  Liu H, Prashant NM, Spurr LF, Bousounis P, Alomran N, Ibeawuchi H, Sein J, Słowiński P, Tsaneva-Atanasova K, Horvath A.
• Transcriptomics and functional characterization of megakaryocytic-derived platelet-like particles: impaired aggregation and prominent anti-tumor effects.
  Garofano K, Mariani V, Rashid K, Suwunnakorn S, Sidahmed A, Horvath A, Maggirwar SB, O'Brien TJ, Perera MA, Whalen M, Lee NH.Platelets. 2025 Dec;36(1):2449344. doi: 10.1080/09537104.2024.2449344. Epub 2025 Jan 15.PMID: 39812346.
• Fibroblast-Mediated Macrophage Recruitment Supports Acute Wound Healing.
  Amuso VM, Haas MR, Cooper PO, Chatterjee R, Hafiz S, Salameh S, Gohel C, Mazumder MF, Josephson V, Kleb SS, Khorsandi K, Horvath A, Rahnavard A, Shook BA.J Invest Dermatol. 2025 Jul;145(7):1781-1797.e8. doi: 10.1016/j.jid.2024.10.609. Epub 2024 Nov 22.PMID: 39581458 .
• The HDAC6 inhibitor AVS100 (SS208) induces a pro-inflammatory tumor micro environment and potentiates immunotherapy.
  Kovalovsky D, Noonepalle S, Suresh M, Kumar D, Berrigan M, Gajendran N, Upadhyay S, Horvath A, Kim A, Quiceno-Torres D, Musunuri K, Villagra A.Sci Adv. 2024 Nov 15;10(46):eadp3687. doi: 10.1126/sciadv.adp3687. Epub 2024 Nov 15.PMID: 39546602 .
• Cell therapy using ex vivo reprogrammed macrophages enhances antitumor immune responses in melanoma.
  Noonepalle SKR, Gracia-Hernandez M, Aghdam N, Berrigan M, Coulibaly H, Li X, Zevallos-Delgado C, Pletcher A, Weselman B, Palmer E, Knox T, Sotomayor E, Chiappinelli KB, Wardrop D, Horvath A, Shook BA, Lee N, Dritschilo A, Fernandes R, Musunuri K, Shibata M, Villagra A.J Exp Clin Cancer Res. 2024 Sep 14;43(1):263. doi: 10.1186/s13046-024-03182-w.PMID: 39272209.

View complete list of publications on PubMed.